Tutorial 1.2 - Import modules from Biomart

Tutorial 1.2 - Import modules from Biomart

• 1.
  Tutorial 1.2: ImportPathways From KEGG Import a module file that maps human genes to KEGG pathways
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  STEP 1 ClickImport Data from KEGG or select Import> Modules>KEGG pathways...
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  STEP 2 Leavedefault options and click Next
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  STEP 2 Select homosapiens and click Next
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  STEP 3 Select the type of identifier for genes. This must correspond with the attribute of the rows in you data matrix. In this case since the attribute used in IntOGen matrix are Ensembl Gene IDs, we will choose this for attributes of items in the module file. Click Next.
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  STEP 4 Give a name to the file that will be downloaded and indicate a Folder where to place it. Click Finish.
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  Once the downloadhas been completed you will have two new files in the directory that you indicated. This file is a table with the This file is a two columns file that annotations of pathway ids. For each maps the gene with the pathway id pathway id the name of the pathway is indicated.
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